Flagship Pioneering, LLC 13F Portfolio

CIK 1400240 Filing since Q3 2016 Q2 2026 filed Aug 14, 2026
Holdings as of Jun 30, 2026, from the 13F filed Aug 14, 2026.

Portfolio Snapshot

5 positions · Q2 2026

Flagship Pioneering, LLC reported 5 positions worth $1.54B for the quarter ended Jun 30, 2026, up 32.6% on the prior quarter. It opened 0 new positions, added to 0, trimmed 0 and exited 0. Its largest holding is Generate Biomedicines, Inc. at 68.7% of the portfolio.

Portfolio Value
$1.54B
+32.6% QoQ · +473.6% YoY
Positions
5
0 new · 0 sold out
Top 10 Concentration
100%
of portfolio value
Largest Position
GENB 68.7%
Generate Biomedicines, Inc.
Net Buying
$0.00
$0.00 bought · $0.00 sold
Turnover
0%
of the portfolio traded
Top Sector
Healthcare
100% of value
Track Record
40
quarters on file since Q3 2016

Portfolio Value & Positions

Value Positions

Reported 13F market value at each quarter end. A change mixes trading with price moves in the positions held.

Sector Allocation

1 sectors
100%
Healthcare
Healthcare100%

Quarterly Buying & Selling

Bought Sold

Dollar value of shares bought and sold each quarter, at that quarter’s price. It counts trading only, not price changes.

Position Changes

How many positions were opened, added to, trimmed or closed each quarter.

Sector Allocation Over Time

Share of reported value in each sector at every quarter end.

Healthcare

Largest Buys

Q2 2026

No positions were added to this quarter.

Largest Sells

Q2 2026

No positions were reduced this quarter.

New Positions

Q2 2026

No new positions this quarter.

Closed Positions

Q2 2026

No positions were closed this quarter.

Holdings · Q2 2026

5 Positions

As ofJun 30, 2026
Value$1.54B
Top 10100%
Avg position$307.98M
# Activity
Showing all 5 positions 13F filings on SEC EDGAR

Tip. Select a row to see that position’s full history at Flagship Pioneering.

About Flagship Pioneering, LLC’s 13F Portfolio

What are Flagship Pioneering, LLC’s largest holdings?

As of its Q2 2026 13F filing, Flagship Pioneering, LLC’s five largest positions were Generate Biomedicines, Inc. (GENB) at 68.7%, Moderna, Inc. (MRNA) at 21.1%, Sana Biotechnology, Inc. (SANA) at 5.7%, Foghorn Therapeutics Inc. (FHTX) at 4.0%, Seres Therapeutics, Inc. (MCRB) at 0.6% of the reported portfolio.

How much is Flagship Pioneering, LLC’s portfolio worth?

Flagship Pioneering, LLC reported a 13F portfolio worth $1.54B across 5 positions for Q2 2026. That is up 32.6% from the previous quarter.

Where does this data come from?

From the Form 13F-HR reports Flagship Pioneering, LLC files with the SEC each quarter, within 45 days of quarter end. A 13F lists long positions in US-listed equities and options; it excludes short positions, cash, bonds and most non-US holdings.

Similar-Sized Institutions

by reported 13F value

13F data reflects long positions in US-listed equities and options as reported to the SEC up to 45 days after quarter end. It excludes short positions, cash, bonds and most non-US securities, so it is not a complete picture of a manager’s assets.